Introduction to GAM and GAMM with R: Bayesian and frequentist approaches
CSIRO’s Macroecological Modelling Research Group will be hosting Alain Zuur and Elena Leno who will present a five day course on GAM and GAMM using both
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CSIRO’s Macroecological Modelling Research Group will be hosting Alain Zuur and Elena Leno who will present a five day course on GAM and GAMM using both Bayesian and frequentist approaches.
This course follows on from the very successful LME/GLMM course that was run by Alain and Elena last year.
It will focus on ecological problems/datasets and will be valuable to those who need to model non-linear patterns within their study species or system.
You can download the course flyer and register through Dr Zuur’s website http://www.highstat.com/statscourse.htm
Cost: Approx. $1140 (AUD).
Course content
Monday
- Revision multiple linear regression, Poisson GLM and Bernoulli GLM.
- Revision mixed effects models.
- Revision Bayesian statistics and MCMC.
Tuesday and Wednesday morning
- Theory presentation on GAM using the gam function from mgcv.
- Gaussian, Poisson, negative binomial and Bernoulli GAM using the mgcv package in R.
- Interactions between smoothers.
- This module is based on Chapter 2 in Zuur (2012).
Wednesday afternoon and Thursday morning
- Theory presentation on technical details of GAM
- GAMM for nested count and binary data (Poisson, negative binomial, Bernoulli) using gamm and gamm4.
- This module is based on various chapters in Zuur et al. (2014) and Chapter 3 in Zuur (2012).
Thursday afternoon and Friday morning
- Fitting a GAM or GAMM using MCMC in JAGS.
Friday afternoon
- What to write in a paper.
- Time allowing: Fitting a GAM (in INLA) and adding spatial and temporal correlation.
- A video file with fully worked out R code will be provided.
Location
Conference room, Christian Labs, CSIRO Black Mountain, Canberra.