Introduction to GAM and GAMM with R: Bayesian and frequentist approaches

CSIRO’s Macroecological Modelling Research Group will be hosting Alain Zuur and Elena Leno who will present a five day course on GAM and GAMM using both

schedule Date & time
Date/time
11 Jul 2016 1:00am - 15 Jul 2016 1:00am
person Speaker

Speakers

Alain Zuur and Elena Leno, Highland Statistics

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Description

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CSIRO’s Macroecological Modelling Research Group will be hosting Alain Zuur and Elena Leno who will present a five day course on GAM and GAMM using both Bayesian and frequentist approaches.

This course follows on from the very successful LME/GLMM course that was run by Alain and Elena last year.

It will focus on ecological problems/datasets and will be valuable to those who need to model non-linear patterns within their study species or system.
 
You can download the course flyer and register through Dr Zuur’s website http://www.highstat.com/statscourse.htm
               
Cost: Approx. $1140 (AUD).

Course content

Monday

  • Revision multiple linear regression, Poisson GLM and Bernoulli GLM.
  • Revision mixed effects models.
  • Revision Bayesian statistics and MCMC.

Tuesday and Wednesday morning

  • Theory presentation on GAM using the gam function from mgcv.
  • Gaussian, Poisson, negative binomial and Bernoulli GAM using the mgcv package in R.
  • Interactions between smoothers.
  • This module is based on Chapter 2 in Zuur (2012).

Wednesday afternoon and Thursday morning

  • Theory presentation on technical details of GAM
  • GAMM for nested count and binary data (Poisson, negative binomial, Bernoulli) using gamm and gamm4.
  • This module is based on various chapters in Zuur et al. (2014) and Chapter 3 in Zuur (2012).

Thursday afternoon and Friday morning

  • Fitting a GAM or GAMM using MCMC in JAGS.

Friday afternoon

  • What to write in a paper.
  • Time allowing: Fitting a GAM (in INLA) and adding spatial and temporal correlation.
  • A video file with fully worked out R code will be provided.

 

Location

Conference room, Christian Labs, CSIRO Black Mountain, Canberra.