Nextflow: Scalable, sharable and reproducible computational workflows across clouds and clusters

Date & time

1–2pm 14 February 2019

Location

Webinar

Speakers

Radoslaw Suchecki, CSIRO

Large analysis workflows are fragile ecosystems of software tools, scripts and dependencies. This complexity commonly makes these workflows not only irreproducible but sometimes even not re-runnable outside their original development environment.

Nextflow is a reactive workflow framework and a domain specific programming language which follows the dataflow paradigm and offers an alternative, and arguably superior, approach to developing, executing and sharing pipelines.

In this webinar we will follow the steps required for developing sharable, version controlled, container-backed workflows, which can be seamlessly executed across different environments from a laptop to cluster to cloud. We will do this by leveraging Nextflow’s integration with code and container image hosting services such as GitHub and Docker Hub, and out of the box support for various HPC cluster schedulers and the Amazon AWS cloud.

 

Updated:  17 June 2019/Responsible Officer:  Director/Page Contact:  Coordinator